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If user select output with figure, LTR_FINDER will produce a PNG file to show the relative position of each LTR retrotransposons. The figure was plotted by both normal axis and logarithmic axis. Elements drawn on silver background was plotted by their real size, that means, 1 pixel stand for 1 base. Elements drawn on white background was plotted under logarithmic axis, so that the long distance could be resized to place on a small canvas. Blue circles denote for PBS, brown circles stand for PPT, and purple circles on the end of LTRs are TSRs.
Figure 2: Legend of output figure