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-g, Extension max gap,
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Parameters
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-o, Gap open penalty,
-D,
Max distance between LTRs
, (positive integer)
-d,
Min distance between LTRs
, (positive integer)
-L,
Max LTR Length
, (positive integer)
-l,
Min LTR Length
, (positive integer)
Distance between LTRs is:
The four parameters makes detected models meet common features of LTR retrotransposons.
2009-04-09