next up previous
Next: -S, Output score threshold, Up: Parameters Previous: -s, Predict PBS by

-a, Use ps_scan to predict IN(core), IN(c-term) and RH, dirname

This parameter is a directory name. LTR_FINDER can predict protein domains by calling ps_scan, which can be obtained from ExPASy-PROSITE (http://www.expasy.org/prosite/). User should place data file `prosite.dat' and ps_scan in this directory. If this parameter is enabled, LTR_FINDER will call them and report these protein domains if they are detected.


2009-04-09