next up previous
Next: Figure output Up: Output format Previous: Full output & Summary

Summary output

Summary output is extracted from Full-output by omitting some detailed information. Here is an example output:
>Sequence: CHR2 Len:813138
[1] CHR2 Len:813138
Location : 29632 - 35590 Len: 5959 Strand:+
Score    : 9 [LTR match score:1]
Status   : 11111111100
5'-LTR   : 29632 - 29963 Len: 332
3'-LTR   : 35259 - 35590 Len: 332
5'-TG    : TG , TG
3'-CA    : CA , CA
TSR      : 29627 - 29631 , 35591 - 35595 [ATAAT]
Sharpness: 0.479,0.52
Strand + :
PBS   : [17/22] 30031 - 30052 (ThrAGT)
PPT   : [11/15] 35215 - 35229
Domain: 31889 - 32416 [possible ORF:31193-35236, (IN (core))]
Domain: 33779 - 34387 [possible ORF:31193-35236, (RT)]



2009-04-09